Plant MITE

SE3720474

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11542
Solanum lycopersicum
SE3720474
Mutator
M14
SL2.40ch05:23348950-23349284
TTTATAATT
GGGA

Secondary structure and sequence

TSD TIR

5'

3'

TTTATAATT    AAATAAACA     G     G        C       C  A       C         CT       CA        G A   ------------ATA           T          CT  C  GA    -  A   CCTAATAT    --C     C TCAA
         GGGA         AGTAT CCTTA ACTATGAT GAAATTT AG GACACAT TTAACTAAA  AAGGTCC  TTACCCCC A CCC               TTTTTTTTGGT ATTTTGTGCA  TT TG  TTAC TG CAT        CTCT   ACTCC C    
         ||||         ||||| ||||| |||||||| ||||||| || ||||||| |||||||||  |||||||  |||||||| | |||               ||||||||||| ||||||||||  || ||  |||| || |||        ||||   ||||| |     
         CCCT         TCATG GGAAT TGATACTG CTTTAAG TC CTGTGTG AATTGATTT  TTCCGGG  AATGGGGG T GGG               AAAAGAAATCA TGAAACATGT  AA AC  AATG AC GTG        GAGG   TGAGG G    
TTAATAATT    ATTCTATAA     -     A        A       T  G       A         TT       AC        G G   GGAGAGAGTATTTGA           T          TT  A  AG    C  C   -------T    CAC     T TGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720474

TTTATAATTGGGAAAATAAACAAGTATGCCTTAGACTATGATCGAAATTTCAGAGACACATCTTAACTAAACTAAGGTCCCATTACCCCCGAACCCATATTTTTTTTGGTTATTTTGTGCACTTTCTGGATTACTGACATCCTAATATCTCTCACTCCCCTCAATTGTGTGGAGTCACGGAGTGTGCCACGTAAGACAAAATTTGTACAAAGTTACTAAAGAAAAAGTTTATGAGAGAGGGGGGTGGGGGGTAACAGGGCCTTTTTTTAGTTAAAGTGTGTCGCTTGAATTTCAGTCATAGTATAAGGGTACTAATATCTTATCCCTTAATAATT

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