Plant MITE

SE3710481

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11549
Solanum lycopersicum
SE3710481
Tc1/Mariner
St9
SL2.40ch11:12284129-12284397
TA
TACTCCCTCCGTTCATAATTGTTTGTCAAGGTA

Secondary structure and sequence

TSD TIR

5'

3'

                         T  A            ----    CCCCTC   GAACAATTAATACAAGATGTAATTTGACTAATATAACTCTACTAAACCAAAAATATCTAAAGTCTACATAACTTTTGAATTG
TACTCCCTCCGTTCATAATTGTTTG CA GGTATAGTCATG    CACT      AAT                                                                                  
||||||||||||||||||||||||| || ||||||||||||    ||||      |||                                                                                   
ATGAGGGAGGCAGGTGTTAACAAAC GT CCATATGATTTG    TATA      GGT                                                                                  
                         T  -            TATC    ------   TCTTATTAACAGTAAAATTTGTTAGTTCTTTATTATTTAGTAAAAAAAGGTTAAAACGAGAATTATTAATGAGGTAAAACAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710481

TACTCCCTCCGTTCATAATTGTTTGTCAAGGTATAGTCATGCACTCCCCTCAATGAACAATTAATACAAGATGTAATTTGACTAATATAACTCTACTAAACCAAAAATATCTAAAGTCTACATAACTTTTGAATTGAACAAAATGGAGTAATTATTAAGAGCAAAATTGGAAAAAAATGATTTATTATTTCTTGATTGTTTAAAATGACAATTATTCTTGGATATCTATGTTTAGTATACCTGTCAAACAATTGTGGACGGAGGGAGTA

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