SE3710483

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11551
  • Solanum lycopersicum
  • SE3710483
  • Tc1/Mariner
  • St4
  • SL2.40ch05:63830654-63830915
  • TA
  • TACTCCCTTCGTCTCATTTTATACGTCACCTTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
    CC    -      T      C T  CC     GATTTCA         CAA     TC     C  T      TC   ---       TAAACA       TTATC      -----     -  CATA   CT
TACT  CTTC GTCTCA TTTATA G CA  TTTTG       AGAGTCAAA   GTTTA  TTTGA CA AAATTT  GTA   GATCTTT      TTTTGAA     ATTTAT     TGTGA CT    GTA  
||||  |||| |||||| |||||| | ||  |||||       |||||||||   |||||  ||||| || ||||||  |||   |||||||      |||||||     ||||||     ||||| ||    |||  T
ATGA  GAAG CAGAGT AAATAT C GT  AAAAT       TCTCAGTTT   TAAAT  AAATT GT TTTAAA  CGT   TTAGAAG      AAAACTT     TAAATA     ACATT GA    CAT  
    -A    A      T      A T  AA     ACATAAC         -AC     TC     A  C      TA   ACC       -TTAAA       TACTT      TATAA     T  --TG   TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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