SE3720484

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11552
  • Solanum lycopersicum
  • SE3720484
  • Mutator
  • M37
  • SL2.40ch07:59182230-59182406
  • AATTAGAAA
  • GAGTGAAGTGACAAAAACAAATTTAAACTATCTTATTTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
AATTAGAAA          A      CAA         ATC         -----------   AGTTTTGTACATAAATTAATAAGTGATATT
         GAGTGAAGTG CAAAAA   ATTTAAACT   TTATTTTTT           GTG                              
         |||||||||| ||||||   |||||||||   |||||||||           |||                              T
         CTCATTTTAT GTTTTT   TAAATTTGA   AATAAAAAA           GGA                              
 AAGATTAA          A      ATG         CTA         ACTCAATATAT   TTTGACGCTCCTCACGCTCAAAATATGTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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