Plant MITE

SE3710486

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11554
Solanum lycopersicum
SE3710486
Tc1/Mariner
St3
SL2.40ch11:49117414-49117654
TA
TACTCCCTCCGTTTCTCAAAGAATGACCT

Secondary structure and sequence

TSD TIR

5'

3'

        C      TC            --AG      T   CACGGAGTTTAAGAAAATAAAGAAGATTTTTGATCATGTGGTTCTAAATTAAAGTTATGTCAAATGTACAAAATTGCCC
TACTCCCT CGTTTC  AAAGAATGACCT    TTTCAC TGG                                                                               
|||||||| ||||||  ||||||||||||    |||||| |||                                                                                
ATGAGGGA GCAAAG  TTTCTTACTGGA    AGGAAA AAT                                                                               
        A      TT            AGAA      -   CATACAAAGTTTTTCTTACTGGAGAAAGAAAAAAACCATTATTGAAAGGTGCACCGTACAAATTCCGGTGTTCTAATTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710486

TACTCCCTCCGTTTCTCAAAGAATGACCTAGTTTCACTTGGCACGGAGTTTAAGAAAATAAAGAAGATTTTTGATCATGTGGTTCTAAATTAAAGTTATGTCAAATGTACAAAATTGCCCTTTAATCTTGTGGCCTTAAACATGCCACGTGGAAAGTTATTACCAAAAAAAGAAAGAGGTCATTCTTTTTGAAACATACTAAAAAGGAAAGAAGGTCATTCTTTTTGAAACGAAGGGAGTA

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