Plant MITE

SE3720487

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11555
Solanum lycopersicum
SE3720487
Mutator
M2
SL2.40ch07:3865028-3865352
TTTATTTTT
GGGAAAATGCACAAGTACCCCCTCAACCTATGTCCAAAATCCCAGAGATACACTTATACTATATTAAGGTCCTATTACCCCCTGAACTTATTTTATAAGTAATTTTCTACCCCTTTTTTGGCTACGTGACACTAGTTTG

Secondary structure and sequence

TSD TIR

5'

3'

TTTATTTTT    A     A          C    C        A                                              -              A   A    TC           TGG       A     G    AAAAAAAAAG     CA
         GGGA AATGC CAAGTACCCC TCAA CTATGTCC AAATCCCAGAGATACACTTATACTATATTAAGGTCCTATTACCCCC TGAACTTATTTTAT AGT ATTT  TACCCCTTTTT   CTACGTG CACTA TTTG          TCAAC  
         |||| ||||| |||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||  |||||||||||   ||||||| ||||| ||||          |||||   
         CCCT TTACG GTTCATGGGG AGTT GATACGGG TTTAGGGTCTCTGTGTGAATATGATATGATTCCAGGATAATGGGGG ACTTGAATAAAATA TTA TAAA  ATGGGGAAAAG   GATGCAC GTGAT GAAC          GGTTG  
TTTTTATTT    A     G          -    A        C                                              T              A   G    CA           CAG       C     A    -----ACCCG     CT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720487

TTTATTTTTGGGAAAATGCACAAGTACCCCCTCAACCTATGTCCAAAATCCCAGAGATACACTTATACTATATTAAGGTCCTATTACCCCCTGAACTTATTTTATAAGTAATTTTCTACCCCTTTTTTGGCTACGTGACACTAGTTTGAAAAAAAAAGTCAACCATCGTTGGGCCCACAAGATAGTGCCACGTAGGACGAAAAGGGGTAACAAATGATTAATAAAATAAGTTCATGGGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGATTTCGGGCATAGATTGAGGGGTACTTGGGCATTATCCCTTTATTTTT

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