SE3720488

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11556
  • Solanum lycopersicum
  • SE3720488
  • Mutator
  • M34
  • SL2.40ch11:4727273-4727442
  • AGGATATAA
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
AGGATATAACAGGAAAACACTTACCC    -    CATTCACATCAAATCAATGTAATTTTTATTATTACGTGATTTAATGAAATAAAATGAACT
                          GCAT CGAG                                                            
                          |||| ||||                                                             
                          AGCC GTTT                                                            
                   ACAATAT    C    AAATAGGCATGGCTTACATATGTGGTTCGATTATGTACGTACAGTACACAAATCTAAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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