SE3720493

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11561
  • Solanum lycopersicum
  • SE3720493
  • Mutator
  • M38
  • SL2.40ch12:2222563-2222925
  • TATATATGT
  • TATATATGTGGAGTTCGGAGTCTAAAGAGTATAAAATTAACAAAAATCCTAAAACGGTATATAAAATTTTATATTAACCAAAACGATAAAATCGCTGGAACAACAACGATTTCATCCACCAGAAAAAGCAAAATCGCTGCTACTGCAACCATTTTGCAAAATGCGATTTGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
                           A         --          CC                            C       A                   A       A      A                          A C             C   ----     TTTCTT
TATATATGTGGAGTTCGGAGTCTAAAG GTATAAAAT  TAACAAAAAT  TAAAACGGTATATAAAATTTTATATTAA CAAAACG TAAAATCGCTGGAACAACA CGATTTC TCCACC GAAAAAGCAAAATCGCTGCTACTGCA C ATTTTGCAAAATG GAT    TTGAA      
||||||||||||||||||||||||||| |||||||||  ||||||||||  |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||| | ||||||||||||| |||    |||||      T
GTGTATATATCTCAAGCCTCGGATTTC CATATTTTA  ATTGTTTTTA  ATTTTGCTATATATTTTAAAATATAATT GTTTTGC ATTTTAGCGACCTTGTTGT GCTAAAG AGGTGG CTTTTTCGTTTTAGCGACGATGACGT G TAAAACGTTTTAC CTA    AATTT      
                           C         TA          AA                            A       C                   C       G      C                          C C             A   TAAA     TTTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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