Plant MITE

SE3720496

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11564
Solanum lycopersicum
SE3720496
Mutator
M9
SL2.40ch11:49450915-49451237
TTTTAAAAA
TTTTAAAAAGACATAATACATAAATGTGTCCTTTAACTTGGCTTCAAATCACATTTATGTCTTTCAATTTTGTGTGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAACAAGTGGACACATGAGTCATACATGGCACAATACATGTA

Secondary structure and sequence

TSD TIR

5'

3'

         A A      A          T -       T                                  T       C      A A     AC                                 A   A   C            ATTTT    CC
 TTTTAAAA G CATAAT CATAAATGTG C CTTTAAC TGGCTTCAAATCACATTTATGTCTTTCAATTTTG GTGTGCA AAATAG C CTTAA  TTGTATAAAGTTGAACAAGTGGACACATGAGTC TAC TGG ACAATACATGTA     TTGT  
 |||||||| | |||||| |||||||||| | ||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||| | |||||  ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||     ||||  T
 AAAATTTT C GTATTA GTATTTATAT G GAAATTG ACCGAAGTTTAGTGTAAATACGGGAAGTTAAAAC CACACGT TTTATC G GAATT  AGCATATTTCAACTTGTTCATCTGTGTACTTGG ATG ACC TGTTATGTGCAT     GATA  
A        C -      C          - T       C                                  C       A      - C     CA                                 -   C   T            CTTGT    CA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720496

TTTTAAAAAGACATAATACATAAATGTGTCCTTTAACTTGGCTTCAAATCACATTTATGTCTTTCAATTTTGTGTGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAACAAGTGGACACATGAGTCATACATGGCACAATACATGTAATTTTTTGTCCTACATAGTGTTCTACGTGTATTGTTCCACGTAGGTTCATGTGTCTACTTGTTCAACTTTATACGAACTTAAGCGCTATTTATGCACACCCAAAATTGAAGGGCATAAATGTGATTTGAAGCCACGTTAAAGTGTATATTTATGCATTATGCCTTTTAAAAA

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