SE3710498

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11566
  • Solanum lycopersicum
  • SE3710498
  • Tc1/Mariner
  • St1
  • SL2.40ch12:47261255-47261516
  • TA
  • TACTCCCTCCGTCCGGAATTGTTTGTCATG

Secondary structure and sequence

TSD    TIR
5'



3' 
                              GTTTCTATTTTTTG       CTATAAAAACTTTGACTAACATTTTAAGATGTATTTTTTCATCATTTTAATATGCAAAAAATTGTAATTTATAGTACTTTTATAT
TACTCCCTCCGTCCGGAATTGTTTGTCATG              AGTCAAA                                                                                     
||||||||||||||||||||||||||||||              |||||||                                                                                     A
ATGAGGGAGGCAGGCCTTAACAAACAGTAC              GCGAATA                                                                                     
                              -----------AAC       GCTTTCAGTTAAACTGATTAAAAGTTTCCATTTAACCTAGTGTAATTAAGCTATAAACTTCGTTTTTTTAATCTATAAGATTTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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