SE3730512

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11580
  • Solanum lycopersicum
  • SE3730512
  • hAT
  • Hat23
  • SL2.40ch10:59918119-59918257
  • CTAAAGGT
  • GGTCTAAGTTGCGCGGACTCTTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
 CTAAA  T   A     G           -CTTTT    TGCCGCACC            T     CTTAC
      GG CTA GTTGC CGGACTCTTCA      TCGA         CGTGTCGGATTC CCAAA     
      || ||| ||||| |||||||||||      ||||         |||||||||||| |||||     A
      TC GAT CAACG GCCTGAGAAGT      AGTT         GCACAGCCTAAG GGTTT     
TGGAAA  -   A     A           TATTAC    ---CCCCAC            T     TCATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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