SE3720516

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11584
  • Solanum lycopersicum
  • SE3720516
  • Mutator
  • M2
  • SL2.40ch01:38126706-38127030
  • TAAAGTAAA
  • AGGGATAATGCACAAGTACCCCCTCAACCTATGCCCGAAATCCCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCTGAACTTATTTTACAAGTAATTTTCTACCCCTTTTTAGCCTACGTGGCACTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAGTAA           A              A               C                                        -             CA         C  C        A               GTTTAAAAAAAAAG     CA
        AGGGATAATGC CAAGTACCCCCTCA CCTATGCCCGAAATC CAGAGACACACTTATACTATACTAAGGTCCTATTACCCCC TGAACTTATTTTA  AGTAATTTT TA CCCTTTTT GCCTACGTGGCACTA              TCAAC  
        ||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||| || |||||||| |||||||||||||||              |||||   
        TCCCTATTACG GTTCATGGGGGAGT GGATACGGGCTTTAG GTCTCTGTGTGAATATGATATGATTCCAGGATAATGGGGG ACTTGAATAAAAT  TTATTAAAA AT GGGAAAAA TGGATGCACCGTGAT              GGTTG  
AAATGAAA           G              G               A                                        G             AA         A  A        C               ----AGAACACCTA     CT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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