SE3720519

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11587
  • Solanum lycopersicum
  • SE3720519
  • Mutator
  • M30
  • SL2.40ch12:39518-39885
  • TTTGAAGAA
  • TTTGAAGAAGGGAAAAGGACAAATATACCCCGGGACTATCGT

Secondary structure and sequence

TSD    TIR
5'



3'
          AA                  C  -------  G AC      AAAC G               - G             A             T   A           GA              CACT   ATGGATGACAAAAT      --    A   -  --         T      CA      A
   TTTGAAG  GGGAAAAGGACAAATATA CC       CG G  TATCGT    G GGTATGCAGATACCC C GTCATACTTTTGG ACATTGGTGCCCT GCC TCCAAAAACTA  GCATATATGCCCTT    CTA              AGGGAC  ACGT GTG CA  ATCTTATCC TCGATC  ATATTT 
   |||||||  |||||||||||||||||| ||       || |  ||||||    | ||||||||||||||| | ||||||||||||| ||||||||||||| ||| |||||||||||  ||||||||||||||    |||              ||||||  |||| ||| ||  ||||||||| ||||||  |||||| A
   AAGTTTC  CCCTTTTTCTGTTTATAT GG       GC C  ATGGTA    T CCATACGTCTATGGG G CAGTATGAAAACT TGTAACCACGGGA CGG AGGTTTTTGAT  TGTATATATGGGAA    GAT              TCCCTG  TGTA CAC GT  TAGAATAGG GGCTAG  TGTAAA 
AAG       --                  A  TTTAACA  A GT      --AA G               A G             C             -   C           AA              ATAT   --------------      TA    -   A  AT         T      -C      T

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End