SE3720521

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11589
  • Solanum lycopersicum
  • SE3720521
  • Mutator
  • M11
  • SL2.40ch06:305277-305675
  • TATTCATTA
  • GAATTTTTAACCAAACTAAACCATTATATAAAACAATTTACCAAAGTAATACATTTTTCTAAAATTTTACAAAACTAGTATAAACGTATTTCACGGTAATGTTTTAGGGTATATTTAATTTTTTAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
 TATTCATTA  AT   T           AC           ACA      C         C                                                                AAT         ACTAACA  A           T   T    GTA            GGAG            G
          GA  TTT AACCAAACTAA  CATTATATAAA   ATTTAC AAAGTAATA ATTTTTCTAAAATTTTACAAAACTAGTATAAACGTATTTCACGGTAATGTTTTAGGGTATATTT   TTTTTAAAA       GC TTAGGTTGATA ATG TACT   AGTAACGTTTTA    TAAAACGTTACT 
          ||  ||| |||||||||||  |||||||||||   |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||       || ||||||||||| ||| ||||   ||||||||||||    |||||||||||| T
          CT  AAA TTGGTTTGATT  GTAATATATTT   TGAGTG TTTTATTAT TAAAAAGATTTTAAAATGTTTTGATCATATTTGCATAAGGTGTCATTGCAAAATCCTATATAAA   AAAAATTTT       CG AGTCTAACTAT TAC ATGA   TCATTGCAAAAT    ATTTTGCAATGA 
ATTACTTATA  CC   T           CA           CAG      A         A                                                                -AT         CAACTAC  C           C   C    GTG            GAGG            G
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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