Plant MITE

SE3740524

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11592
Solanum lycopersicum
SE3740524
CACTA
Ca3
SL2.40ch08:3067585-3067729
CTT
CACTAAAAAGAAAAGGTGAATTATATGAGAATTTTTCTGGAGATTAGAATGAAAA

Secondary structure and sequence

TSD TIR

5'

3'

CTT         G    -G            A A          A      A       -TTCGCAT    CT
   CACTAAAAA AAAA  GTGAATTATATG G ATTTTTCTGG GATTAG ATGAAAA        GAAA  
   ||||||||| ||||  |||||||||||| | |||||||||| |||||| |||||||        ||||  T
   GTGATTTTT TTTT  CGTTTAATGTAC C TAAAAGGACC TTAATC TACTTTT        CTTT  
TTC         G    GA            C C          C      A       TAAACATT    TA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE3740524

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE3740524