SE3720525

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11593
  • Solanum lycopersicum
  • SE3720525
  • Mutator
  • M2
  • SL2.40ch07:55435236-55435560
  • AATTTATTA
  • GGGATAATGCACAAGTACCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
AATTTATTA          A          CTCAA          A    C                                                       A         C           A        GA     G    AAAAAAATG     CA
         GGGATAATGC CAAGTACCCC     CCTATGCCCG AATC CAGAGACACACTTATGCTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTAT AGTAATTTT TACCCCTTTTT GCCTACGT  CACTA TTTG         TCAAC  
         |||||||||| ||||||||||     |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||  ||||| ||||         |||||   
         CCCTATTACG GTTCATGGGG     GGATACGGGC TTAG GTCTCTGTGTGAATATGATATGATTTCAGGATAATGGGGGGACTTGAATAAAATA TTATTAAAA ATGGGGAAAAG TGGATGCA  GTGAT GAAC         GGTTG  
ATTATTTAA          G          -AATC          C    A                                                       A         A           C        AC     A    ----ACCCG     CT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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