SE3750538

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11606
  • Solanum lycopersicum
  • SE3750538
  • PIF/harbinger
  • To9
  • SL2.40ch01:70196353-70196801
  • TTA
  • AGGGGTCTTTTGGTAGAGTGTAT

Secondary structure and sequence

TSD    TIR
5'



3'
TT      CT               TAGGA          A  T     CTTT           --C     -      C   TTATCAACCT      AACTAGCG                   ----C   T   TATT     GTGCATTGCTAATACCATAGATTTCTAGGTATTAGCAAGCAGTGGTTTTAATGCATGCATTAAAATGATAAAAGACCCAATTGTCCCTCAAAA
  AGGGGT  TTTGGTAGAGTGTAT     AAAATAATGC TG AATAG    GTGTGTTAGTA   CTTGT TTGGTA TAT          ATGTAT        CTTGCATTAGTTATTCACT     TAT GTG    AAGGT                                                                                             
  ||||||  |||||||||||||||     |||||||||| || |||||    |||||||||||   ||||| |||||| |||          ||||||        |||||||||||||||||||     ||| |||    |||||                                                                                             C
  TCCCCA  AAACCATCTCACATA     TTTTATTACG AT TTATC    CACATAATCAT   GAACG AGTCAT ATG          TACATA        GAACGTAATTAATATGTAT     AAA ATT    ACGTA                                                                                             
AT      AC               -----          -  -     ---T           TAC     T      T   ----------      ATCAATAA                   CTAAC   -   ----     ACAAACCAAACTATGTAATTTTTATTATACATAACGCTATTTTCTTAATAAATGTTTCTATGGAAGTGAAATACCACCTTTTCTACATTTTTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End