SE3720539

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11607
  • Solanum lycopersicum
  • SE3720539
  • Mutator
  • M28
  • SL2.40ch01:69794806-69795601
  • CATAATTTG
  • CATAATTTGGGATAAATATTCGGTCAAGTATAATTAGGTCAAATAAAATTCAATAGTTCCATAGATTCATGTCATGGGTACTATATAATAATTTACGGTTAGGATTCATTTAAATTATATAATCATTATAATAATATAACCAACAAAATTGTCAACTTTTTCATTTTTTAAAATTATCAAATAAAACAATTAAGTGTACTCAAACTAAAATTTTTCAGAAAAAAAATTAAGATTGACGGGA

Secondary structure and sequence

TSD    TIR
5'



3'
     --TT         T          G              A   A   C   A   CC              --     AC     A        C    A                  TAA     A        T  C  A    A       --C     CA           T           C              AAA    A        -        AT    A   A     ATATTTAAGATTGACGAAA      AA    T          -   CCCA    TCTTC    ATAATTTCACATACTTTCTCCAAATTATGAAATAATCCTCACAAGTAGATTAAACTTTAAAATATCATTGAGAACTTTAAATAATAATTCAACTAAGAAAAAAAA
CATAA    TGGGATAAA ATTCGGTCAA TATAATTAGGTCAA TAA ATT AAT GTT  ATAGATTCATGTCA  TGGGT  TATAT ATAATTTA GGTT GGATTCATTTAAATTATA   TCATT TAATAATA AA CA CAAA TTGTCAA   TTTTT  TTTTTTAAAAT ATCAAATAAAA AATTAAGTGTACTC   CTAA ATTTTTCA GAAAAAAA  TAAG TTG CGGGA                   ATATGC  ACTT CCGACTTTTT ACC    AACC     GAGA                                                                                                         
|||||    ||||||||| |||||||||| |||||||||||||| ||| ||| ||| |||  ||||||||||||||  |||||  ||||| |||||||| |||| ||||||||||||||||||   ||||| |||||||| || || |||| |||||||   |||||  ||||||||||| ||||||||||| ||||||||||||||   |||| |||||||| ||||||||  |||| ||| |||||                   ||||||  |||| |||||||||| |||    ||||     ||||                                                                                                          
GTGTT    ACCCTATTT TAAGCTAGTT ATATTAATCCAGTT ATT TAA TTA CAG  TATCTAAGTGCGGT  ACCTA  ATATA TATTAAAT CCAA TCTAGGTAAATTTAATAT   AGTAG ATTATTAT TT GT GTTT GGCAGTT   AAAAA  AAAAAATTTTA TAGTTTATTTT TTAATTCGCATGGG   GATT TAAAAAGT CTTTTTTT  ATTC AAC GCCCT                   TATACG  TGAA GGTTGAAAAA TGG    TTGG     GTAT                                                                                                         
     TAAT         C          -              C   A   A   C   AA              CC     --     C        A    C                  CTG     A        T  T  A    C       AAT     TA           -           A              ATC    A        T        --    C   C     -------------------      CC    C          A   ACAG    ---CA    GAACATAACTTAAAAAGTTTAATGTAACTAAAATTTTTCTTAAATTGTTAAAACTTCTTAGACTTATTTATATAAAAATATTAATAAACTTTTGGAAGCTTATTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End