SE3720544

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11612
  • Solanum lycopersicum
  • SE3720544
  • Mutator
  • M42
  • SL2.40ch04:3550684-3551473
  • ATTAGATAA
  • TTAGATAAGAGTTCAGAGTCTAAATAAGTTATAAAAATGTAAAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
A   GA   -      A      A  T                    -TAA   AAA     TA      -  ---  ATGTAACTAAAATAAGCTTAGTGAAAAAAAAGTTTCACTTTATTCAAATTTTTAAATGTTTTTCTTTAGTGTTATAACGTGTATTTTTAATATAAAATGAAACTTTTTCTTACACTTTATAAAGTGGAAAATAATCTTTCACTTTGTAAAAAATTGAAACTTTAAACGATATGCCTTGTAAAAAATTAAGTGGATATTTAGCATTGTGTTTGGAAGGACAATTATAATAAACGGTATTTCCGTCATGTATAATTTCGCTATCCCAATAAATTGAAACTTTAACGGTAGGTGTAGAAGACATTTTCTTTTTGAGATTGAAATGA
 TTA  TAA GAGTTC GAGTCT AA AAGTTATAAAAATGTAAAAG    TCA   TAAGT  TTATTT TA   GT                                                                                                                                                                                                                                                                                                                                   
 |||  ||| |||||| |||||| || ||||||||||||||||||||    |||   |||||  |||||| ||   ||                                                                                                                                                                                                                                                                                                                                    
 AAT  ATT CTCAGG CTTGGA TT TTCGGTATTTTTATGTTTTC    TCA   AAGTG  AAATAG TT   AA                                                                                                                                                                                                                                                                                                                                   
    AG   A      C      C  C                    TTTA   ---     --      A  AAA  AGATTTGCAAAAAGCAATCATAGTATTACACATAAAATTATATATTGCCTTGAAAAAGAAGGTGAAATGTTTCACTTTGAAAAAGAATGTGAAATATTTCACCTTCTTTTAGAATGTGAAATATTCTCCTTATAAAAAGTGCAAAACTTCTTCAAAAAAGTCACAACAGTATGTTAATATACTAAATTGTATAGTATTTTTACTTTTTTTTTGTCAAAATAATACATAAAAATAAAAAAATAAGACTTTTTAGAAAGTTAGAGATAAATTCCTGTAAATTTGTATCAACTAGCGTGTATGTTGTATTTCAGAAGATAAAAAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3