SE3730545

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11613
  • Solanum lycopersicum
  • SE3730545
  • hAT
  • Hat13
  • SL2.40ch09:65223686-65224041
  • ATTACATT
  • TCAGGAGCGGCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTACAT     A C     AAACATAT     --GTCT    CAAAAATCAAA    G     T    -------      TTTATAACTTTTATATAATTGCTTTCTTCTAGTTTTCAGTTGATAATATAACCATTCTTATTTTAAATTATTTTTTATGAGATATAGTACTCCAAATATGTCAA
       TCAGG G GGCTC        TAGTG      AAAG           TGGG CCTTA ATTT       GAATTG                                                                                                        
       ||||| | |||||        |||||      ||||           |||| ||||| ||||       ||||||                                                                                                         
       AGTCC C CTGAG        ATCAC      TTTC           ATCC GGGAT TAAA       GGGTAA                                                                                                        
TTACATT     C A     ------CT     AATTTT    -TATACACAGA    G     T    TTCTTCG      AAATTTTTATTATCCAATATTTAATAATGAAAAATTGCTTATAACTTATGATAAACATCTTTTTCATTTGAAAAGTACTTTTTACTTCCTTAATAATCTTTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3