Plant MITE

SE0710001

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11620
Thellungiella parvula
SE0710001
Tc1/Mariner
St1
ch4-1:822871-823114
TA
TACTCCCTCCGTTTCATAAAAAATGTCATTTTAAGGTTTT

Secondary structure and sequence

TSD TIR

5'

3'

      C  C    CAT   A            A      AATG      -   AA   -  GTCACTTTATATTTCCAATGCAGAATTTTAAACAAAAATACATTTTTAACCATGTAATTTTA
TACTCC TC GTTT   AAA AATGTCATTTTA GGTTTT    TTGTTT CTC  AGA GT                                                              
|||||| || ||||   ||| |||||||||||| ||||||    |||||| |||  ||| ||                                                              A
ATGAGG AG CAAA   TTT TTACAGTAAAAT TCAAAA    TGTATA TTT  TTT AT                                                              
      A  T    -TT   C            C      AGTG      A   --   A  TAGATTTTGAGATAAAATGAAAAAAAGTATGTAATTTATATAAATAAAGAGATTAATTATGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0710001

TACTCCCTCCGTTTCATAAAAAATGTCATTTTAAGGTTTTAATGTTGTTTCTCAAAGAGTGTCACTTTATATTTCCAATGCAGAATTTTAAACAAAAATACATTTTTAACCATGTAATTTTAATGTATTAATTAGAGAAATAAATATATTTAATGTATGAAAAAAAGTAAAATAGAGTTTTAGATTAATTTTTTAATATGTGTGAAAAACTCTAAAATGACATTCTTTTTAAACTGAAGGAGTA

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