SE0750003

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11622
  • Thellungiella parvula
  • SE0750003
  • PIF/harbinger
  • To1
  • ch2-2:2256990-2257368
  • TTC
  • GGCCATGTTCGTTTGGCAGTTGCTAGCGGCTGCGACTATAATCTACGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTC    A                 C      C        TAA   A   ---C   -    CG GATTAGATGTCGCTATTACCTGTTCGTTTTAATATCGCGCGACTAGTAGCTGCGATTAGTCGCAAGATTGTTCGTTTTCTTATCGCGCGATTGGTCGCTGCAACATTAGATTTTTGTCATTTTATG
   GGCC TGTTCGTTTGGCAGTTG TAGCGG TGCGACTA   TCT CGA    TAG CGAT  C                                                                                                                              
   |||| ||||||||||||||||| |||||| ||||||||   ||| |||    ||| ||||  |                                                                                                                              T
   CCGG ACAAGCAAACCGTCAGC ATCGCC ACGCTGAT   AGA GCT    TGG ACAA  G                                                                                                                              
CTT    G                 T      A        CTC   C   AACT   C    -- CAAACTGTTAGCGATCGCCGGCGCTGTATAGCGTCGCTGGTTAGCGCTCGCTAGGCGCTGGATTTAAAATTAGCGACTTTTTTTGTCGCAACGCTAATTTTTAAGACGCTAGTTTTTTTAATTTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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