SE0730004

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11623
  • Thellungiella parvula
  • SE0730004
  • hAT
  • Hat1
  • ch2-1:445412-446069
  • TTCTACTT
  • CTTAAGTAAGGCTGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCTACTT      -TA   -     CAAAT  TCAGAAACCGAAAACCCGAACCGAACCGAACCGAAAATTATCCGATATAGAACCGAATTATAAATCATAAATACCCGAACGGTTCTTTTTTAAAAAATATTTTTGGTACCCGGACCGAACCGGAACCGAACCGATAACCGAATGGTTACTTTGGGTACCCGAAACATAATGCATATTCAAAAATATTATTTATATTTAGGTTAAAATAACCAAAATATCTTAATTACATCTATAAATATAATTTATTTTAATTATGTTAAAATACTTGAATTAACCGAAATTATCCAAATATTTTGATCTG
        CTTAAG   AGG CTGGG     TA                                                                                                                                                                                                                                                                                                             
        ||||||   ||| |||||     ||                                                                                                                                                                                                                                                                                                             A
        GAATTC   TCC GACCC     GC                                                                                                                                                                                                                                                                                                             
              TTA   A     -ATAA  CCATAAGCAAGCCTAAGCCAAACTCAAAAAGCCTAAAACCCAAAAATGCCTAAAACTTATATCTTTGGCAAGCCCATAAATATTTTAAGCCTAGCCAAACCAAAGAAGTCAAAAGCCCAGCCAAGCCCATCACTAAAATCCTTGACCGACCATTGGCTTTTTTTAGCCCAGACTAAGCCAATGCCAAGCCAAGCTCAAAAAGCCTATTTAAGCCCATTTAAGCCCATTACACCCATTTTTATAGTCTATTAATCTCATTAAATCTACTTTTATGGGTCATTAAGCCCATTAAAACCAATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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