SE0720006

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11625
  • Thellungiella parvula
  • SE0720006
  • Mutator
  • M1
  • ch6-2:93139-93510
  • TAATATGAA
  • ATATGAAGAGAAATTTTAAGAAATATCACTTTAATGATACCAATTTTAAAAATTACTAT

Secondary structure and sequence

TSD    TIR
5'



3'
 TA    -GAA     A       AA    CAC   A      C  -AT         T     -GACTGATG  C     C    T    A                -AA   TT            A          AA        C   GGGTTAGAAAATAT        AAGTTTAATTAGAAATATTGTAA
   ATAT    GAGAA TTTTAAG  ATAT   TTT ATGATA CA   TTTAAAAAT ACTAT         TC ATTTT AAAA ATAC TATTTTTATAAGTGTC   AAA  TTGAATTTATAA GGTTTATAAA  CATGTTTA AAG              GTTTTACA                       
   ||||    ||||| |||||||  ||||   ||| |||||| ||   ||||||||| |||||         || ||||| |||| |||| ||||||||||||||||   |||  |||||||||||| ||||||||||  |||||||| |||              ||||||||                       G
   TATA    CTCTT AAAGTTT  TATG   AAA TACTAT GT   AAGTTTTTA TGATA         AG TAAAA TTTT TATG ATAAAAATATTTGCAG   TTT  AATTTAAATATT TTAAATATTT  GTATAAAT TTC              TAAATATT                       
AAG    ATCC     -       -A    TTT   A      A  AAT         -     ACAAATAAA  A     A    -    -                ATA   TT            C          -A        A   --------------        AATACAATATTTGAAATATTTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End