SE0730009

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11628
  • Thellungiella parvula
  • SE0730009
  • hAT
  • Hat3
  • ch4-2:986737-987245
  • TAATTTAA
  • TTAGGTCTCGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATTTAA      CTC   --ATAAATAC   AACCCGAAATCCGAACCCGAACCCAACCTAAAATATCCGAACCCGAAGCCGAATTTTTTCAAAAAGTACCCGAATGGGACTTAAAACTAGGTATTTCGGGTATCGGTAATATCCGTTCCGAACCGAAACCCGAACAAGTACCCTAAAAAACCCGAAGTTAAACCTTTTTTTTACTTAGTTTCGAGTAATTCATATATTTTTTATTTAGTTTTCTGTTTTTGAG
        TTAGGT   GGC          TTG                                                                                                                                                                                                                               
        ||||||   |||          |||                                                                                                                                                                                                                               T
        AATCCG   CCG          GGC                                                                                                                                                                                                                               
  AATTTA      TAC   CAAGCCTATT   AAGCCTAAGCTTAGCCCAAAAAGTCTAAAAACTCAAAAGCCCAAATCAGAAGATCCGGGGTAAGCTCAAAAATTTTTATAGCCTAGCCCATACCAATCATTAAAAAAACCCAAACCTAGATAAAACATTATGGCATGTTCAGGGTAAAATATAGGCTTGAGTTTAGCCTAAGCCCAATATGATGAAACCCAAGCCTATGATTATGATTTTTGTTGTATAAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End
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