SE0720010

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11629
  • Thellungiella parvula
  • SE0720010
  • Mutator
  • M1
  • ch4-2:718361-718724
  • TTTATTATC
  • AAAAATATCACTTTCATGATATTATTTTTCAAAATTACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTATTATCGATAAATTATA        CAC                       T  -  ACTGA   A         -    T     AA       --GAA  ATCA   T        G                 A           ---CAGTT    T       G   ---------     GAA
                    AAAAATAT   TTTCATGATATTATTTTTCAAAA TA CA     TTG TATCTATTT CAAA AATAC  ATTTTTA     GT    AAA ATTTGAAT TATAAGGATTTATAAAA TATGTTTATAA        TCGT TTATAAA TTT         TATAA   
                    ||||||||   ||||||||||||||||||||||| || ||     ||| ||||||||| |||| |||||  |||||||     ||    ||| |||||||| ||||||||||||||||| |||||||||||        |||| ||||||| |||         |||||    
                    TTTTTATG   AAAGTACTATAGTAAAAAGTTTT AT GT     AAC ATAGATAAA GTTT TTATG  TAAAAAT     CA    TTT TAAATTTA ATATTCTTAAATATTTT GTATAAATATT        AGTA AATATTT AAA         ATGTT   
CTATTATTTCTCTCTTAAAG        TTA                       C  A  -AATA   A         A    -     -A       ATTTG  AATA   T        A                 -           CTAAAATT    C       G   TAGTTTGGA     ATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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