SE0850006

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11635
  • Thellungiella salsuginea
  • SE0850006
  • PIF/harbinger
  • To4
  • Scaffold_3917:70560-70832
  • TTA
  • AGAGCATTATTATCGCTGGTTTCTTATGAGTTTCTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                   TTT  -    A         AA       ATAATAAATATAATTAAATGAAATATTTAACTGAAGAAAAGTTTCTTATTTGGGAATCATAAAATAAGTTTCTTCTGTCACATGTCT
  AGAGCATTATTATCGCTGG   CT TATG GTTTCTTAT  ATATTTA                                                                                       
  |||||||||||||||||||   || |||| |||||||||  |||||||                                                                                        
  TCTCGTAGTAATAGCGGTC   GG ATAT TAAAGAATA  TTAAAAA                                                                                       
AT                   TTT  T    C         AA       TTAATAATATAAGACAAATTTTTGCACCGGATGTCTTGGTTTTTAAGTTATATAAAATAATAATATACAACAATTGGTAAATTCATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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