Plant MITE

SE0810008

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11637
Thellungiella salsuginea
SE0810008
Tc1/Mariner
St2
Scaffold_10999:4608-4909
TA
TACTCCCTCTGTTCCTAAATAGATGATGTTTTAAGATTT

Secondary structure and sequence

TSD TIR

5'

3'

                                 AG    AGTA  GT      AAA    A       -    TATTTAATGTTATTTTATTTGTAAATTAAAAAATACTTAATTTACATTGGTTGTAAGAATATCAAATTTCTGAAATAGTATT
TACTCCCTCTGTTCCTAAATAGATGATGTTTTA  ATTT    TT  TTCACA   GATA TGTTTTA GAAG                                                                                  
|||||||||||||||||||||||||||||||||  ||||    ||  ||||||   |||| ||||||| ||||                                                                                  G
ATGAGGGAGACAAGGATTTATCTACTACAAAAT  TAAA    GT  GTGAAT   AATT TTCGTTA TTAT                                                                                  
                                 CA    ---A  --      ---    C       T    GTATAAAATAATTAATGAAAAACAAAAAAAAATTTTGATAAAACGATACAAGTTATTTATATATTGGAAATAAGTGTGAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0810008

TACTCCCTCTGTTCCTAAATAGATGATGTTTTAAGATTTAGTATTGTTTCACAAAAGATAATGTTTTAGAAGTATTTAATGTTATTTTATTTGTAAATTAAAAAATACTTAATTTACATTGGTTGTAAGAATATCAAATTTCTGAAATAGTATTGAAAAGTGTGAATAAAGGTTATATATTTATTGAACATAGCAAAATAGTTTTAAAAAAAAACAAAAAGTAATTAATAAAATATGTATTTATTGCTTCTTAATAAGTGTGAAAATACTAAAACATCATCTATTTAGGAACAGAGGGAGTA

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