SE0850011

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11640
  • Thellungiella salsuginea
  • SE0850011
  • PIF/harbinger
  • To3
  • Scaffold_10539:13602-13852
  • TAA
  • AGAGCATGTACATCAGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                T AACCCCAAA            CC    -   AATAATATTTTTTTTTGGTTTTAGTTTTTCTTTTTTATTTAATTCAAAAATTATAATTTTCGACCAATCAGAATGCTC
  AGAGCATGTACATCAG G         GAGAGGGGTTCA  AGAA TAT                                                                              
  |||||||||||||||| |         ||||||||||||  |||| |||                                                                              C
  TCTCGTACATGTAGTC C         TTCTCCCCAAGT  ACCG GTC                                                                              
AA                - ----CCTAA            --    T   AAAAACTTTGTTTTCTCGAATTAAAACTTCTCTGTCATAGTAGGGCTGCTTGTACTTATCTGCCATAGTAGAGCTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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