SE0810013

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11642
  • Thellungiella salsuginea
  • SE0810013
  • Tc1/Mariner
  • St2
  • Scaffold_2540:261-606
  • TA
  • TACTCCCTCTGTTCCGGAATAGATGATGTTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
                                  AAATTTCACTCTTATTAA    CA   ----  TATGT  T   TTTAGCTATTTTTTTTATCTTTTCACTTTCTAAAATTTGTTTTTCACACACTTATTAAATGCTCTATAATCATTATGAATGAACTTTAGCTCCATCACTTGATACTATT
TACTCCCTCTGTTCCGGAATAGATGATGTTTTAG                  GAAA  ATA    AA     GT GCT                                                                                                             
||||||||||||||||||||||||||||||||||                  ||||  |||    ||     || |||                                                                                                             G
ATGAGGGAGACAAGGTCTTATCTACTACAAAATC                  TAAG  AAG    AA     GG TTT                                                                                                             
                                  -----------------C    --   AAAC  -----  -   TATCTACTACAAAACCTTTATAAATTACGATAATGTGAAATGTTCTTATTAAATTATTGTATAAAATAAATTAATAATACTTCATTATTTAAAAATAAACATTTGTTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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