SE0850015

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11644
  • Thellungiella salsuginea
  • SE0850015
  • PIF/harbinger
  • To8
  • Scaffold_4159:8313-8606
  • TTA
  • AGACCATGAACATTGCTGTCTCTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   C           C  TCT    -CAGCA       ------------       ATATTATTATTTTAATCAGTGTTTTATGTAAAAGTAGAGAAACGTCGCTTATATTAGAACGCATAAGAGACGTTTTTAAAACATGTGATGCATA
  AGA CATGAACATTG TG   CTTA      TCTCTTA            AAAATAA                                                                                              
  ||| ||||||||||| ||   ||||      |||||||            |||||||                                                                                              T
  TCT GTACTTGTAAC AC   GAGT      AGAGAAT            TTATAAA                                                                                              
AT   C           A  TTT    TAACCC       TATTTGAAAAAA       AAATAATTTTATCTTTCTTATTACTACTTTGTACACAGTCCTTTTTCCACTCCTTCCTTTTTTATAAAAAAAAGGAGGTATAACTTCTTGGTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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