SE0830019

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11648
  • Thellungiella salsuginea
  • SE0830019
  • hAT
  • Hat4
  • Scaffold_12421:10176-10417
  • GTTGCAGG
  • TTGCAGGCAGGGCCGGCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
G      G            T     AAG       AA CCTTTGATTCGGGCGCCAAAAATATATACATTGGATAAGGGCATCAATTATTAAAAATGTGTTGTAGTGCAGTGGTTTTTTGTCT
 TTGCAG CAGGGCCGGCCC GGACT   GCAGGTG  G                                                                                     
 |||||| |||||||||||| |||||   |||||||  |                                                                                      
 GACGTT GTCCCGGCCGGG TTATG   CAAACCT  G                                                                                     
G      G            -     ---       -- CGGATTTCGGGTAAATTGTATAATTATTTTTTGAAGTGTTTAACGACGGGGAGTCTGAGCTTGAGACATGACATCGGCGGATAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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