SE0850020

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11649
  • Thellungiella salsuginea
  • SE0850020
  • PIF/harbinger
  • To11
  • Scaffold_6126:23912-24143
  • TAA
  • AGACCATGTTCAATGGTAGCAACTCTAAAAAGGGTGCTTAAATATTATTTAATTATTAAATTTAAAATCAT

Secondary structure and sequence

TSD    TIR
5'



3'
TA   C           G   CAA  C  AA           A   TT    AA   TT     TA       -------CTTCATTTTA     T -  T  GCTAGTATCTGTTAAGCATC
  AGA CATGTTCAATG TAG   CT TA  AAGGGTGCTTA ATA  ATTT  TTA  AAATT  AAATCAT                 TAACA A TG CT                    
  ||| ||||||||||| |||   || ||  ||||||||||| |||  ||||  |||  |||||  |||||||                 ||||| | || ||                    G
  TCT GTACAAGTTAC GTC   GA AT  TTCTCACGAAT TAT  TAAA  AAT  TTTAA  TTTAGTA                 TCGTA C AC GA                    
AA   C           -   TAC  -  CC           C   --    AA   TT     --       TTTTTATATTATTAAAC     A T  -  ATTTATTCTCAACATTCGTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End