Plant MITE

SE0810028

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11657
Thellungiella salsuginea
SE0810028
Tc1/Mariner
St3
Scaffold_10976:17945-18285
TA
TACTCCCTCTGTTTCATTATAGTTGATTTTC

Secondary structure and sequence

TSD TIR

5'

3'

                               ---------   -   T      TTGTTTCATAATATTTGATTTTTTACATCTAATTAATGCACATCTTTTCTTTAAGTTGAATGAATCATATTTATGCATGTTGCTTTACAAAATTTATTAATTATAAGCATTAATTAAAAGA
TACTCCCTCTGTTTCATTATAGTTGATTTTC         TAG GTT TTTTTC                                                                                                                         
|||||||||||||||||||||||||||||||         ||| ||| ||||||                                                                                                                         G
ATGAGGGAGACAAAGTAATATCAACTAAAAG         CGT TGT TAATTC                                                                                                                         
                               ACTTATAAA   A   C      TTTCAATATTTACGAGTTAATAAACGACAAATAAAACAAATTAATCCAATAAAAATGTTAATTAAAGTAATGAAAATAATCATAATGACCAAAAATGAAATTGGACTCGAAAAGTAGAGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0810028

TACTCCCTCTGTTTCATTATAGTTGATTTTCTAGGTTTTTTTTCTTGTTTCATAATATTTGATTTTTTACATCTAATTAATGCACATCTTTTCTTTAAGTTGAATGAATCATATTTATGCATGTTGCTTTACAAAATTTATTAATTATAAGCATTAATTAAAAGAGAGGAGATGAAAAGCTCAGGTTAAAGTAAAAACCAGTAATACTAATAAAAGTAATGAAATTAATTGTAAAAATAACCTAATTAAACAAAATAAACAGCAAATAATTGAGCATTTATAACTTTCTTAATCTGTATGCAAATATTCAGAAAATCAACTATAATGAAACAGAGGGAGTA

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