Plant MITE

SE0850037

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11666
Thellungiella salsuginea
SE0850037
PIF/harbinger
To20
Scaffold_10550:46866-47125
TAA
AGAGCATGTACATCAGGGGATCAAGAGAGGTTC

Secondary structure and sequence

TSD TIR

5'

3'

TA                GG    -AA            - C  A           AAAAGATCTTAATATTAAAGAGACAGTATCATCCCGACGAACCTGAAGAGACGGTATCATCCCAAAATAAATCATC
  AGAGCATGTACATCAG  GATC   GAGAGGTTCATG A AC GTTTTTGAGAC                                                                            
  ||||||||||||||||  ||||   |||||||||||| | || |||||||||||                                                                             
  TCTCGTACATGTAGTC  TTGG   TTCTCCAAGTGG C TT TCTTCAAGTAG                                                                            
AA                AT    GGA            T -  -           TCTTATATTATTATAAAAAAAAAAACCAAAATCCAAAAAAAAAAATTAAGCTTTTAATATTAAAAATTGGTTAGTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0850037

TAAGAGCATGTACATCAGGGGATCAAGAGAGGTTCATGACACAGTTTTTGAGACAAAAGATCTTAATATTAAAGAGACAGTATCATCCCGACGAACCTGAAGAGACGGTATCATCCCAAAATAAATCATCCTGATTGGTTAAAAATTATAATTTTCGAATTAAAAAAAAAAACCTAAAACCAAAAAAAAAAATATTATTATATTCTGATGAACTTCTTTCTGGTGAACCTCTTAGGGGTTTACTGATGTACATGCTCTAA

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