Plant MITE

SE0850038

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11667
Thellungiella salsuginea
SE0850038
PIF/harbinger
To7
Scaffold_2173:3278-3527
CTT
GGCTCTGATTGGTAACCTGCGGAATGGCGGAATTGCG

Secondary structure and sequence

TSD TIR

5'

3'

CTT    C           -C                    TTTTTAAACACA   C      --  -   -----T CCAATCAACAAAAATCTGCGTAATAAAAAACTACACACAAAAACACAGACTGCGTTTT
   GGCT TGATTGGTAAC  TGCGGAATGGCGGAATTGCG            ATT CGCAGG  TT TTT      G                                                          
   |||| |||||||||||  ||||||||||||||||||||            ||| ||||||  || |||      |                                                           
   CCGA ACTAACCATTG  ACGCCTTACCGCCTTAACGC            CTT TTTTAG  CG CTT      T                                                          
TTC    A           AA                    ------------   -      AA  C   ATCTAA TCGCTGAATATTCAGCGAAAAGACGCCTTACTGAAAAGGAAACATAAAAACAATTCGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0850038

CTTGGCTCTGATTGGTAACCTGCGGAATGGCGGAATTGCGTTTTTAAACACAATTCCGCAGGTTTTTTGCCAATCAACAAAAATCTGCGTAATAAAAAACTACACACAAAAACACAGACTGCGTTTTTGCTTAACAAAAATACAAAGGAAAAGTCATTCCGCAGAAAAGCGACTTATAAGTCGCTTAATCTATTCCGCAAGATTTTTTCCGCAATTCCGCCATTCCGCAAAGTTACCAATCAAAGCCCTT

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