Plant MITE

SE0830039

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11668
Thellungiella salsuginea
SE0830039
hAT
Hat8
Scaffold_6296:11744-12497
GTAGACAG
GTAGACAGTAGGACTGGAA

Secondary structure and sequence

TSD TIR

5'

3'

    AG  AG    A      ----        -  TA     ----    TTCAAAGTATCCGGATCCGGCTCCGGCTCCGGATTTGACGGATAATCAATTTTATTATCCGGATCCGGATCTGAAAACTCCGGATATCCAGAGACCGAATATTCGGTTTGAACCGAAGATTTACGGATATCCGATCAGATATCCGGTTTCGTTGATTTAAAAAAAAAACTTCAATTTTTAAAATTATAATGAGATAACATATATAATTAAAATGTATCATTATAGCAAAAATTACAAATACCAAAAATTTAAAAGCATTCAAGTAGCATTCAAATAACACAAAGTTTAAAAGTTTACATAACAAAAGAGAAAATAGTAATAGAGAAGTTAATT
  GT  AC  TAGG CTGGAA    CGGAGCCG GA  TCCGG    ACTT                                                                                                                                                                                                                                                                                                                                             
  ||  ||  |||| ||||||    |||||||| ||  |||||    ||||                                                                                                                                                                                                                                                                                                                                             T
  CA  TG  ATCC GACCTT    ATAGGCCA AG  GCGAT    TAGG                                                                                                                                                                                                                                                                                                                                             
GA  GA  --    C      AATA        T  --     AAGC    CCATAGGCCAAGATAGGCTAGACATTTTTGGCCTATAAGCACATCAAGCCTAGGCCTAGGCCTATCACTTTAATTCATAAGCCAATAAAGCCTATGCCTAGGCCTATTATCTTTTAAAATTTTAGCCTATAGGCAATAGGCAATAGGCAAATAATTCTAAAACTTTTAAAACTTTAGAAACCTATACGTAAATTAAAAAACAAAATTAATACAAACTTTTAACAAAAACCAAATTGAGAAAATGTGTACTAACTTTAAATATAACGTACTATTAAAAGATAAAGTCTAACACTCTCTTCTGGTACTTTTATCTATTGTGTTCCTATACTTCTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0830039

GTAGACAGTAGGACTGGAACGGAGCCGGATATCCGGACTTTTCAAAGTATCCGGATCCGGCTCCGGCTCCGGATTTGACGGATAATCAATTTTATTATCCGGATCCGGATCTGAAAACTCCGGATATCCAGAGACCGAATATTCGGTTTGAACCGAAGATTTACGGATATCCGATCAGATATCCGGTTTCGTTGATTTAAAAAAAAAACTTCAATTTTTAAAATTATAATGAGATAACATATATAATTAAAATGTATCATTATAGCAAAAATTACAAATACCAAAAATTTAAAAGCATTCAAGTAGCATTCAAATAACACAAAGTTTAAAAGTTTACATAACAAAAGAGAAAATAGTAATAGAGAAGTTAATTTATCTTCATATCCTTGTGTTATCTATTTTCATGGTCTTCTCTCACAATCTGAAATAGAAAATTATCATGCAATATAAATTTCAATCATGTGTAAAAGAGTTAAACCAAAAACAATTTTCAAACATAATTAAAACAAAAAATTAAATGCATATCCAAAGATTTCAAAATTTTCAAAATCTTAATAAACGGATAACGGATAACGGATATCCGATTTTAAAATTTTCTATTATCCGGATCCGTATCCGAAATAACCGAATACTTAATTTCACTATCCGGATCCGGATCCGAACTACACGAATATCCGGTTTTTACAGATCGGATAGAACCGGATACCGGATCGAATAGCGGATACCGGATAATAATTCCAGCCCTAGTAGACAG

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