Plant MITE

SE0830048

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11677
Thellungiella salsuginea
SE0830048
hAT
Hat13
Scaffold_8709:24231-24419
GTTATAAG
TTATAAGCATAGCTAACT

Secondary structure and sequence

TSD TIR

5'

3'

G      G  T    AA  CTGAATT  A          ATGGGCTGCAAGCTAGAGAGCAAAAAATGGATTGTTTTACATTTTTTTTTCAAAAATAG
 TTATAA CA AGCT  CT       TC TATTTTTTGC                                                           
 |||||| || ||||  ||       || ||||||||||                                                            
 AATATT GT TCGG  GG       AC TCGGGTTCGT                                                           
G      A  C    CC  ------A  -          TTCATTCAAGTACGAACGTCGGGTATAAAAATGCACTTTTAAAAGATTTTGTTTCGTCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0830048

GTTATAAGCATAGCTAACTCTGAATTTCATATTTTTTGCATGGGCTGCAAGCTAGAGAGCAAAAAATGGATTGTTTTACATTTTTTTTTCAAAAATAGGCTGCTTTGTTTTAGAAAATTTTCACGTAAAAATATGGGCTGCAAGCATGAACTTACTTTGCTTGGGCTCAAGGCCGGCTCTGATTATAAG

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