Plant MITE

SE0810050

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11679
Thellungiella salsuginea
SE0810050
Tc1/Mariner
St3
Scaffold_7878:24017-24314
TA
TACTCCCTCTGTTTCATTATAGTTGATTTTCTG

Secondary structure and sequence

TSD TIR

5'

3'

                                 AATATTTACACACAGATTAAGA    TA    ------------------  TTCAATTATTTACTGTTTATTTTTGTTAATTAAGTTATTTTTACAAATGATTTATTATTTTATTATTACTTTTTCTTTTT
TACTCCCTCTGTTTCATTATAGTTGATTTTCTG                      AAGC  TAAA                  TG                                                                                
|||||||||||||||||||||||||||||||||                      ||||  ||||                  ||                                                                                T
ATGAGGGAGACAAAGTAATATCAATTAAAAGAT                      AAGA  ACAA                  AT                                                                                
                                 -------------CCAAAAAAA    --    AGTATTATAAACTAAAAG  GTAGATTAATTACGTATAGAGAAGAAATTTAACTTACTTATTATAATTACGTATAACGAAATGAGGTAATTACGTGTCAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0810050

TACTCCCTCTGTTTCATTATAGTTGATTTTCTGAATATTTACACACAGATTAAGAAAGCTATAAATGTTCAATTATTTACTGTTTATTTTTGTTAATTAAGTTATTTTTACAAATGATTTATTATTTTATTATTACTTTTTCTTTTTTAACTGTGCATTAATGGAGTAAAGCAATATGCATTAATATTATTCATTCAATTTAAAGAAGAGATATGCATTAATTAGATGTAGAAAATCAAATATTATGAAACAAGAAAAAAAAACCTAGAAAATTAACTATAATGAAACAGAGGGAGTA

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