Plant MITE

SE0850052

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11681
Thellungiella salsuginea
SE0850052
PIF/harbinger
To22
Scaffold_13001:24334-25007
TTA
AGGGCATCTCCAA

Secondary structure and sequence

TSD TIR

5'

3'

TT             CTCTACCTCATTTC    T     TACTATTTTGGTGGAAATTCTTCTCCAACACTACTTCATTTTCACCTGTAAAATGGAAGAATGCCATTTTTTCCTCCAAATATGAAGTAACCCTATTTTCAACGCCATTTTGCAGGTGAACTTTTTTATTTACAAGATAATCTTTTACTTTTCATTAATTCTTAAAACTATATTTTTTATTTATAATTTAATCATTTATATTATATATATTTAATTTAAAATTAAAGATAAATAGATTTAAAATTGAGAATAAAAAATAAAAAAATATAAGAAGATTAACTGAAACTAAAAATAACATAAAATT
  AGGGCATCTCCAA              TTCC CCAAA                                                                                                                                                                                                                                                                                                                
  |||||||||||||              |||| |||||                                                                                                                                                                                                                                                                                                                 
  TCTCGTAGAGGTT              TAAG GAGGT                                                                                                                                                                                                                                                                                                                
AT             -----------ACA    -     AAAAATAGAGATTTTACCTTCTTGACGTTTTACCTCAACTTAAAGAGAGGTTATATAAGAAGATAAAAGTTGAAGTTTTTATTATAAGATTTATATAAGAAGTAAAATATAATAACAATTAATGATTATTATATGAAGTAAATATTTTTAATGTTTACTTGGGTAAATAAAAAAAGTGAATTTTGAAGATATTTAATATTATAATAAAATTTAAGTTGATAATATTATACGTTTATTATGATGTGTGGTAAATTTTATTATTTTATTTCATGTAAAATTAAAATACATAAAGAATACGTAAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0850052

TTAGGGCATCTCCAACTCTACCTCATTTCTTCCTCCAAATACTATTTTGGTGGAAATTCTTCTCCAACACTACTTCATTTTCACCTGTAAAATGGAAGAATGCCATTTTTTCCTCCAAATATGAAGTAACCCTATTTTCAACGCCATTTTGCAGGTGAACTTTTTTATTTACAAGATAATCTTTTACTTTTCATTAATTCTTAAAACTATATTTTTTATTTATAATTTAATCATTTATATTATATATATTTAATTTAAAATTAAAGATAAATAGATTTAAAATTGAGAATAAAAAATAAAAAAATATAAGAAGATTAACTGAAACTAAAAATAACATAAAATTAAAAATGCATAAGAAATACATAAAATTAAAATGTACTTTATTTTATTATTTTAAATGGTGTGTAGTATTATTTGCATATTATAATAGTTGAATTTAAAATAATATTATAATTTATAGAAGTTTTAAGTGAAAAAAATAAATGGGTTCATTTGTAATTTTTATAAATGAAGTATATTATTAGTAATTAACAATAATATAAAATGAAGAATATATTTAGAATATTATTTTTGAAGTTGAAAATAGAAGAATATATTGGAGAGAAATTCAACTCCATTTTGCAGTTCTTCCATTTTAGAGATAAAAATGGAGGAATACATTGGAGATGCTCTTA

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