Plant MITE

SE0830055

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11684
Thellungiella salsuginea
SE0830055
hAT
Hat15
Scaffold_2676:47386-47690
CGCGCAAG
GCGCAAGCAGAGCCGTGCCTA

Secondary structure and sequence

TSD TIR

5'

3'

  C    AA    A          ----------------   TGGAATGAAAAAGGCAATTGCCTAAGGCCACATCTTATATATTAAGTTTAGAGGCCACATTTACAAGTGCATTATAGTTTCTTTGGTTATTTGTCTGGTGCATATGTTTATTTTGTTCA
   GCGC  GCAG GCCGTGCCTA                CAA                                                                                                                       
   ||||  |||| ||||||||||                |||                                                                                                                       A
   CGCG  CGTC CGGCACGGAT                TCC                                                                                                                       
GAA    --    A          TTTAAAATCTCCAGAA   GATTTAAATTTTACACCAGGAAAGTTACTTCAATATATTTTTTAGTGATTAGTTTATATGTCATCATAATTCTATTTAATCACTTTTTACAAATATGCAAATACCACGTTTCTAGTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0830055

CGCGCAAGCAGAGCCGTGCCTACAATGGAATGAAAAAGGCAATTGCCTAAGGCCACATCTTATATATTAAGTTTAGAGGCCACATTTACAAGTGCATTATAGTTTCTTTGGTTATTTGTCTGGTGCATATGTTTATTTTGTTCAATTTTGATCTTTGCACCATAAACGTATAAACATTTTTCACTAATTTATCTTAATACTACTGTATATTTGATTAGTGATTTTTTATATAACTTCATTGAAAGGACCACATTTTAAATTTAGCCTAAGACCTCTAAAATTTTAGGCACGGCACTGCGCGCAAG

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