SE0830062

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11691
  • Thellungiella salsuginea
  • SE0830062
  • hAT
  • Hat20
  • Scaffold_6112:2238-2696
  • ATTATAAC
  • TTATAACCAGTGTTTTTAAATTTGGACCGGACCG

Secondary structure and sequence

TSD    TIR
5'



3' 
A      C             T        --     GC   C ---   CAGGTTGGACCACGAACCGGAAGTGTAGCCGGGTTGAGTCGAAAACCAGATTGAACCGTCAAAAACCGGAAATTAGATAAATCGATAAACCGTATTAAACCGAGTTTAACTAAAAAAACTTAAATCATATTTTTTTTACGTTTTTTAAAAGGTAACAAGTCAATTTGATTTTTGTTTATTTAT
 TTATAA CAGTGTTTTTAAA TTGGACCG  GACCG  GGT A   GAC                                                                                                                                                                                       
 |||||| ||||||||||||| ||||||||  |||||  ||| |   |||                                                                                                                                                                                       T
 AATATT GTTACAAAAATTT GGCCTGGC  CTGGC  TTG G   TTG                                                                                                                                                                                       
C      A             T        GA     --   - CCC   CAAAAACCCAGTACCCAATCATACCAATCTGGTCCAAGTTGGCCCAAACTATTTAAAAAAGTTTATTAATATAAACCTAAATTTTTTTTTTTGGTTTTCTTCATATCTTCTCAATACTAAATCTTTGGAAAAAAAAAAAAACCAGTTTATAAATCTTTGGAATAGAAAATAAAAATTTCATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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