Plant MITE

SE0830064

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11693
Thellungiella salsuginea
SE0830064
hAT
Hat21
Scaffold_8587:60727-60900
CCCCCAAA
CAGTGGCGGAGCCACATAGATTAGGTTGGGGTCATATG

Secondary structure and sequence

TSD TIR

5'

3'

CCCCCAAA              CAT     ---AG       T   --   --CCCCTA    A     --AAAAAT    CAATTT    AGC
        CAGTGGCGGAGCCA   AGATT     GTTGGGG CAT  ATG        GTGA TTTTA        GGTG      ATAA   
        ||||||||||||||   |||||     ||||||| |||  |||        |||| |||||        ||||      ||||    
        GTCACCGCCTCGGT   TTTAA     TAACCCC GTA  TAC        TACT GAAAT        CCAC      TATT   
AAACCCCC              -TT     AGAAG       C   GT   CTTGTATG    -     ACTTACTC    ---AAT    AAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0830064

CCCCCAAACAGTGGCGGAGCCACATAGATTAGGTTGGGGTCATATGCCCCTAGTGAATTTTAAAAAATGGTGCAATTTATAAAGCAAATTATTAACACCCTCATTCATAAAGTCATGTATGTTCCATTGATGCCCCCAATGAAGAAATTTTTTGGCTCCGCCACTGCCCCCAAA

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