Plant MITE

SE0830065

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11694
Thellungiella salsuginea
SE0830065
hAT
Hat2
Scaffold_4403:7491-7665
CATCGGAC
TCGGACCAGTGGCGGAGCCA

Secondary structure and sequence

TSD TIR

5'

3'

CA  G  -C              GCAATT     GATTGGGGGCATACAAAGGTATATATAATTTTATAAGAGGGGGCATTAACATTGAAC
  TC GA  CAGTGGCGGAGCCA      TCTTT                                                         
  || ||  ||||||||||||||      |||||                                                         A
  AG CT  GTCACCGCCTCGGT      GTACG                                                         
 C  G  AC              ------     TAATCGTACCCCAGTAAGCGGGGGTTGGATAAAATTTTTTAACCACATTAAATCATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0830065

CATCGGACCAGTGGCGGAGCCAGCAATTTCTTTGATTGGGGGCATACAAAGGTATATATAATTTTATAAGAGGGGGCATTAACATTGAACACTACTAAATTACACCAATTTTTTAAAATAGGTTGGGGGCGAATGACCCCATGCTAATGCATGTGGCTCCGCCACTGCATCGGAC

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