SE0830066

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11695
  • Thellungiella salsuginea
  • SE0830066
  • hAT
  • Hat22
  • Scaffold_10160:22626-23200
  • TATTAGAC
  • TAGGCCTGGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTAGAC           AC   ---  C  AACCCGAATAATTTATCCGAACCCGACCCGAAAAAGAGAAACCGAACCCGAATCGAAACTGTTAAAATATCCGAACGGTTTTTAAATTTCTAAATCCGAAAAACCAAAACCGAACCAAACCGAACCGAAAATCCGAATGGATATCCGAAATATCCGAAATACAATTATATACCCAAAATACTAACTACAATTAGATTTAATAACCTAAAATTACAATTATAAATCCAAAATATGAATTATTTTTATTCTGAAAATGAT
        TAGGCCTGGGC  ATT   AT CG                                                                                                                                                                                                                                                                  
        |||||||||||  |||   || ||                                                                                                                                                                                                                                                                  G
        ATCCGGACCCG  CAA   TA TA                                                                                                                                                                                                                                                                  
CAGATTAT           --   GCC  -  GGTAAGCCCAAGCCAAGCCTATTAAGCCAAAAAGCCTAAAAGCCAAAAATCTAAATTTTGGGTAAGCCTATAAAAACCTTAAAGCCAAGCCCAAGCCAATATAAGCTAGCCCAAGCCAAGCCCAAGCCTATAGGTTTTTTATTATTTTAATTTATTTTTATTAATTTAAATTTATTTTAATCAATTTAAGTTTATTTTAAACCGTTTTAAATTTTTATATTGATTTTTGAATCATACAAATTTAATAAAACCTAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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