SE0850068

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11697
  • Thellungiella salsuginea
  • SE0850068
  • PIF/harbinger
  • To1
  • Scaffold_27224:4635-4904
  • TAA
  • AGACCATCTCCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C         CCCTAC    AATTTTACTGCAAAACAGAGTTAAAAGCAAGATTCTCTCCATCCCTATTCCAAATCTCACTTCAAAATGGAGTAAAAAATGGAGTTACTCCATATATGGAACAAAAAATAGA
  AGA CATCTCCAA      TGCA                                                                                                                
  ||| |||||||||      ||||                                                                                                                 
  TCT GTAGAGGTT      ATAC                                                                                                                
AA   C         ----AC    TGAAGTATAAAAAAAGATAAAACCTCATTGAAGTTATACCTCAATATAAAATGAGGTTACATTCGAAATAAAAATGAGGTTTTACCTCAATACTGGTTTTTTTATCTTTTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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