Plant MITE

SE0810069

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11698
Thellungiella salsuginea
SE0810069
Tc1/Mariner
St1
Scaffold_23783:14064-14317
TA
TACTCCCTCCGTTTCACAAAGAATGTCATTCTGACA

Secondary structure and sequence

TSD TIR

5'

3'

                      A    A        ---C   -      TTTCAAAAAGAATGTTGTTTTAGAATTCCAATGTAATTTTTAACATAAAATACTATTTTTAACCTCAATAAATTCAGAA
TACTCCCTCCGTTTCACAAAGA TGTC TTCTGACA    TTT TTTTTG                                                                               
|||||||||||||||||||||| |||| ||||||||    ||| ||||||                                                                                
ATGAGGGAGGCAAAGTGTTTCT ACAG AAGACTGT    AGT TGTTTA                                                                               
                      C    C        AAGA   G      ATTCTTTATTCTATTTTCCAGAGAATATGGGAATAATTAAACGTCTTTAACTGAGAACCTTAATATAAATATTAATTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0810069

TACTCCCTCCGTTTCACAAAGAATGTCATTCTGACACTTTTTTTTGTTTCAAAAAGAATGTTGTTTTAGAATTCCAATGTAATTTTTAACATAAAATACTATTTTTAACCTCAATAAATTCAGAAAATTAATTATAAATATAATTCCAAGAGTCAATTTCTGCAAATTAATAAGGGTATAAGAGACCTTTTATCTTATTTCTTAATTTGTGTGAAGAATGTCAGAACGACACTCTTTGTGAAACGGAGGGAGTA

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