Plant MITE

SE1220004

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11727
Citrullus lanatus
SE1220004
Mutator
M1
scaffold300:4446527-4446748
TTAAAATAA
TAAGGGTTCTTTTC

Secondary structure and sequence

TSD TIR

5'

3'

TTAAAA     -GTT  TT  AAAT         AAAACC          -CAAAT    CAAAATTT  CTA       A      ACTACTAT     -          CACATA
      TAAGG    CT  TC    ATAACAAAA      AAAATATTTA      ATAG        CA   TCTATCT CGATAG        TTGTG TCATAATAGA      
      |||||    ||  ||    |||||||||      ||||||||||      ||||        ||   ||||||| ||||||        ||||| ||||||||||       
      ATTCC    GA  AG    TATTGTTTT      TTTTATAAAT      TATC        GT   AGATAGA GTTATC        GACAC AGTGTTATCT      
AATAAA     ATTT  -T  AATT         AATGAC          ATTGAT    -ATCTCAT  ATC       C      -------C     T          AATAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1220004

TTAAAATAAGGGTTCTTTTCAAATATAACAAAAAAAACCAAAATATTTACAAATATAGCAAAATTTCACTATCTATCTACGATAGACTACTATTTGTGTCATAATAGACACATATAATAATCTATTGTGATCACAGCCTATTGCAGATAGACTATGTACTCTACTATTAGTTATAAATATTTTCAGTAATTTTGTTATTTAAGATAGTTTACCTTAAAATAA

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