SE1250006

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11729
  • Citrullus lanatus
  • SE1250006
  • PIF/harbinger
  • To1
  • scaffold260:3169445-3169643
  • TAA
  • GGTTATGTTTGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
 TAA    A        ATGTGT           T      TATT        AAATACAAGTGTTTTGCAACCATTACTCAAAAATGGATTTTGAAAGTTATT
    GGTT TGTTTGGA      TTAATTTAAAA ATAAGT    TTGCAAAA                                                   
    |||| ||||||||      ||||||||||| ||||||    ||||||||                                                   A
    TCAA GCAAACCT      AATTGAATTTT TATTTA    AAAGTTTT                                                   
AATC    -        ------           -      -TGA        TAAATAAAAATAAATTTGTAAAAACTATTCTTTACAAATTTTATTTCTATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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