SE1250010

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11733
  • Citrullus lanatus
  • SE1250010
  • PIF/harbinger
  • To3
  • scaffold15:2241601-2241794
  • TAA
  • AGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA    CTCA      TTGA         AAAGTGTTCTTCAAAAAACTTATTTCCATTTAAACTCTTTTGATAAAACGAGTTTAAAATACACTTCA
  AGGG    TTTGGA    CATTAGAAA                                                                    
  ||||    ||||||    |||||||||                                                                    A
  TCCC    AAACCT    ATAAAAGTT                                                                    
AA    ACAC      -TAT         CACAAATTAAAATTTTTATTCAGTAAAACCTCTTTTAACCTTACAAGCCGTTGGTGAGTTTTATCTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3